Multiplex real-time PCR with HRM for detection of Lactobacillus sakei and Lactobacillus curvatus in food samples / Konstantin A. Kurbakov, Evgenii A. Konorov, Mikhail Y. Minaev, Oksana A. Kuznetsova.
Sažetak

Optimization of fermentation processes requires monitoring the species composition of starter cultures and their growth during fermentation. Most starter cultures contain closely related species. Nowadays, high-resolution melting (HRM) analysis is extensively used for multiplex identification of closely related species. In the present paper, we applied real-time polymerase chain reaction (PCR) with HRM analysis for the detection and differentiation of Lactobacillus sakei and L. curvatus. A primer pair was selected for the site of the rpoA gene of Lactobacillus spp. Eleven starter cultures and fifteen fermented sausages with a known bacterial composition were successfully tested using real-time PCR with HRM analysis with the developed primer pair.; Za optimiranje procesa potrebno je pratiti sastav starter kulture i njezin rast tijekom fermentacije. Većina starter kultura sadržava srodne mikroorganizme. U današnje se vrijeme za identifikaciju većeg broja srodnih vrsta često upotrebljava postupak analize krivulje mekšanja DNK visoke razlučivosti. Stoga je u radu za detekciju i razlikovanje bakterija Lactobacillus sakei i L. curvatus upotrijebljena lančana reakcija polimeraze (PCR) u stvarnom vremenu, te je provedena analiza krivulje mekšanja DNK visoke razlučivosti. Odabran je par početnica za ciljano mjesto vezivanja u genu rpoA, izoliranom iz bakterija roda Lactobacillus spp. S tim je parom početnica uspješno ispitano 1 1 starter kultura i 15 uzoraka fermentiranih kobasica poznatog sastava bakterija.